Merge pull request #10 from openworm/experimental

Change initMembPotential value to "-69.445mV"
openworm · Dec 3, 2024 · cd1fc49 · cd1fc49
2 parents b18adfc + be9d652
commit cd1fc49
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Showing 6 changed files with 6 additions and 6 deletions.
diff --git a/NeuroML2/AWCon.cell.nml b/NeuroML2/AWCon.cell.nml
@@ -53,7 +53,7 @@
                 <channelDensity id="sk_chans" ionChannel="AWCon_sk" condDensity="0.8588531129653401 S_per_m2" erev="-80.0mV" ion="k"/>
                 <spikeThresh value="0mV"/>
                 <specificCapacitance value="0.04437407750320924 F_per_m2"/>
-                <initMembPotential value="-70mV"/>
+                <initMembPotential value="-69.445mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_AWCon" ion="ca" initialConcentration="5e-5 mM" initialExtConcentration="2 mM"/>

diff --git a/NeuroML2/GenerateNeuroML.py b/NeuroML2/GenerateNeuroML.py
@@ -444,7 +444,7 @@ def create_cells(channels_to_include, duration=700, stim_delay=310, stim_duratio
             % (float(xpps[cell_id]["parameters"]["c"]) / surface_area_curved)
         )
 
-        cell.set_init_memb_potential("-70mV")
+        cell.set_init_memb_potential("-69.445mV")
 
         # This value is not really used as it's a single comp cell model
         cell.set_resistivity("0.1 kohm_cm")

diff --git a/NeuroML2/LEMS_Sim_Fig4C_AWCon.xml b/NeuroML2/LEMS_Sim_Fig4C_AWCon.xml
@@ -2,7 +2,7 @@
 
     <!-- 
 
-        This LEMS file has been automatically generated using PyNeuroML v1.3.7 (libNeuroML v0.6.3)
+        This LEMS file has been automatically generated using PyNeuroML v1.3.12 (libNeuroML v0.6.6)
 
      -->
 

diff --git a/NeuroML2/LEMS_Sim_Fig7B_RMD.xml b/NeuroML2/LEMS_Sim_Fig7B_RMD.xml
@@ -2,7 +2,7 @@
 
     <!-- 
 
-        This LEMS file has been automatically generated using PyNeuroML v1.3.7 (libNeuroML v0.6.3)
+        This LEMS file has been automatically generated using PyNeuroML v1.3.12 (libNeuroML v0.6.6)
 
      -->
 

diff --git a/NeuroML2/LEMS_Sim_IClamp_RMD.xml b/NeuroML2/LEMS_Sim_IClamp_RMD.xml
@@ -2,7 +2,7 @@
 
     <!-- 
 
-        This LEMS file has been automatically generated using PyNeuroML v1.3.7 (libNeuroML v0.6.3)
+        This LEMS file has been automatically generated using PyNeuroML v1.3.12 (libNeuroML v0.6.6)
 
      -->
 

diff --git a/NeuroML2/RMD.cell.nml b/NeuroML2/RMD.cell.nml
@@ -49,7 +49,7 @@
                 <channelDensity id="sk_chans" ionChannel="RMD_sk" condDensity="4.736612920353981 S_per_m2" erev="-80.0mV" ion="k"/>
                 <spikeThresh value="0mV"/>
                 <specificCapacitance value="0.09473225840707962 F_per_m2"/>
-                <initMembPotential value="-70mV"/>
+                <initMembPotential value="-69.445mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_RMD" ion="ca" initialConcentration="5e-5 mM" initialExtConcentration="2 mM"/>
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,7 +2,7 @@ @@
         <!--
-            This LEMS file has been automatically generated using PyNeuroML v1.3.7 (libNeuroML v0.6.3)
+            This LEMS file has been automatically generated using PyNeuroML v1.3.12 (libNeuroML v0.6.6)
          -->
@@ Expand Down @@