Update hail to 0.2.127

[mjsteinbaugh]

Update hail to 0.2.127 (required for gentropy 2.0.1 release in #53099)

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[mjsteinbaugh]

typer module isn't getting picked up in the build correctly:

2025-01-08T18:46:51.4895498Z 18:46:49 �[32mBIOCONDA INFO�[0m (OUT) Installing collected packages: hail�[0m
2025-01-08T18:46:51.4895951Z 18:46:50 �[32mBIOCONDA INFO�[0m (OUT) Successfully installed hail-0.2.127�[0m
2025-01-08T18:46:51.4896427Z 18:46:50 �[32mBIOCONDA INFO�[0m (OUT) hailctl config set query/backend spark�[0m
2025-01-08T18:46:51.4896881Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) Traceback (most recent call last):�[0m
2025-01-08T18:46:51.4898272Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/conda-bld/hail_1736361598998/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/bin/hailctl", line 7, in <module>�[0m
2025-01-08T18:46:51.4899565Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     from hailtop.hailctl.__main__ import main�[0m
2025-01-08T18:46:51.4901348Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/conda-bld/hail_1736361598998/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib/python3.10/site-packages/hailtop/hailctl/__main__.py", line 1, in <module>�[0m
2025-01-08T18:46:51.4902722Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     import typer�[0m
2025-01-08T18:46:51.4903155Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) ModuleNotFoundError: No module named 'typer'�[0m
2025-01-08T18:46:51.4903656Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) make: *** [Makefile:396: install] Error 1�[0m
2025-01-08T18:46:51.4904121Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT) Traceback (most recent call last):�[0m
2025-01-08T18:46:51.4904768Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build�[0m
2025-01-08T18:46:51.4905351Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     utils.check_call_env(�[0m
2025-01-08T18:46:51.4905997Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env�[0m
2025-01-08T18:46:51.4906741Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)     return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)�[0m
2025-01-08T18:46:51.4907559Z 18:46:51 �[32mBIOCONDA INFO�[0m (OUT)   File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ�[0m

[mjsteinbaugh]

This is a beast to manage, not sure how to fix the typer issue

[mjsteinbaugh]

Hitting this error when attempting to build from tarball instead of git repo directly:

2025-01-08T20:36:34.8412318Z 20:36:34 �[32mBIOCONDA INFO�[0m (OUT) $SRC_DIR/hail $SRC_DIR�[0m
2025-01-08T20:36:34.8412842Z 20:36:34 �[32mBIOCONDA INFO�[0m (OUT) fatal: not a git repository (or any of the parent directories): .git�[0m
2025-01-08T20:36:34.8413484Z 20:36:34 �[32mBIOCONDA INFO�[0m (OUT) version.mk:3: *** "git rev-parse HEAD" failed to produce output.  Stop.�[0m
2025-01-08T20:36:34.8414014Z 20:36:34 �[32mBIOCONDA INFO�[0m (OUT) Traceback (most recent call last):�[0m

[aliciaaevans]

I wonder if it would work to use PyPI as the source or do you think it would run into the same issue? https://bioconda.github.io/contributor/guidelines.html#python

[mjsteinbaugh]

@aliciaaevans Great idea, I'll try that and see if just building the Python package works