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Earlham Institute

BBSRC-supported life science research institute in Norwich, UK

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  1. KAT KAT Public

    The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

    C++ 210 52

  2. NanoOK NanoOK Public

    Forked from richardmleggett/NanoOK

    Analysis tool for Nanopore sequencing data

    Java 33 8

  3. RAMPART RAMPART Public

    A configurable de novo assembly pipeline

    Java 28 7

  4. 361Division 361Division Public

    361 Division - Scientific Training, Education and Learning

    R 28 31

  5. kontaminant kontaminant Public

    Tool to look for contaminants, with a kmer database.

    C 15 5

  6. earlham-galaxytools earlham-galaxytools Public

    Galaxy tools and workflows developed at the Earlham Institute

    Python 14 14

Repositories

Showing 10 of 147 repositories
  • rfparser Public

    Parse ResearchFish publications to update CKAN

    TGAC/rfparser’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 8, 2025
  • nanopore-mod-course-2024 Public Forked from sathish-t/nanopore-mod-course

    Contains materials used for the nanopore base modification course at the Earlham Institute that ran in 2024

    TGAC/nanopore-mod-course-2024’s past year of commit activity
    CSS 0 117 0 0 Updated Jan 6, 2025
  • SingleCellSchemas Public

    For resources relating to EI Cellgen ISP

    TGAC/SingleCellSchemas’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 6, 2025
  • COPO-documentation Public

    COPO documentation was created using the Sphinx reStructuredText (reST) markup language which is hosted on readthedocs.io. The documentation uses Sphinx.

    TGAC/COPO-documentation’s past year of commit activity
    Python 2 Apache-2.0 0 0 1 Updated Dec 23, 2024
  • grassroots_services_django_web Public
    TGAC/grassroots_services_django_web’s past year of commit activity
    JavaScript 0 1 0 10 Updated Dec 18, 2024
  • eisca Public

    A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.

    TGAC/eisca’s past year of commit activity
    Nextflow 1 MIT 1 0 0 Updated Dec 12, 2024
  • grassroots-service-field-trial Public

    A Grassroots service for storing the data for field trials

    TGAC/grassroots-service-field-trial’s past year of commit activity
    C 2 Apache-2.0 0 0 0 Updated Dec 10, 2024
  • Aequatus Public

    Earlham Institute's Synteny Browser

    TGAC/Aequatus’s past year of commit activity
    JavaScript 7 GPL-3.0 0 1 22 Updated Dec 5, 2024
  • COPO-production Public

    COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.

    TGAC/COPO-production’s past year of commit activity
    JavaScript 1 MIT 2 0 0 Updated Dec 4, 2024
  • reposyncer Public

    GitHub workflow to sync various repo mirrors

    TGAC/reposyncer’s past year of commit activity
    0 MIT 2 0 0 Updated Dec 2, 2024
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