Repositories list

• stato

  Public
  This is the development repository for the STATistics Ontology (STATO). For more information and demonstration on the ontology content, please visit its website:

  statisticsowlontology+ 1obofoundry

  Java

  •8•31•0•0•Updated Jan 6, 2025Jan 6, 2025

• ptox-metadata-manager-client

  Public
  Vue

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•2•1•Updated Dec 4, 2024Dec 4, 2024

• isa-api

  Public
  ISA tools API

  life-sciences-imagedata-managementexperimental-metadata+ 2pythonisa

  Jupyter Notebook

  •

  Other

  •38•42•53•1•Updated Nov 5, 2024Nov 5, 2024

• mzml2isa

  Public
  Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

  Python

  •

  GNU General Public License v3.0

  •6•12•13•2•Updated Sep 3, 2024Sep 3, 2024

• stato-dashboard

  Public
  a obofoundry template based dashboard

  Shell

  •0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• ISAdatasets

  Public
  Repository for ISA datasets, which may be available in different formats (tab, RDF, JSON)

  datasetsisa-jsonisa-tab+ 1isa-datasets

  11•7•2•0•Updated Jul 9, 2024Jul 9, 2024

• isa-rwval

  Public
  Read/write/validation packages for the ISA tools API

  Python

  •

  Other

  •5•1•3•1•Updated Jun 29, 2024Jun 29, 2024

• graph2tab

  Public
  graph2tab, a library to convert experimental workflow graphs into tabular formats

  Java

  •2•6•0•0•Updated Apr 30, 2024Apr 30, 2024

• OntoMaton

  Public
  OntoMaton facilitates ontology search and tagging functionalities within Google Spreadsheets.

  olslovgoogle-spreadsheet+ 4ontologyontology-searchontology-lookup-servicesbioportal

  JavaScript

  •9•41•11•6•Updated Jan 8, 2024Jan 8, 2024

• nmrml2isa

  Public
  Generate ISA-Tab studies from .nmrML files

  Python

  •

  GNU General Public License v3.0

  •0•0•1•0•Updated Nov 6, 2023Nov 6, 2023

• MSIO

  Public
  Metabolomics Standards Initiative Ontology

  data-sciencemetabolomicsmass-spectrometry+ 3data-sharingnmr-spectroscopyfluxomics

  Java

  •2•5•1•1•Updated Jul 11, 2023Jul 11, 2023

• ISAvalidator-ISAconverter-BIImanager

  Public
  The ISAvalidator, ISA converter and BII data manager tools

  Java

  •15•12•19•2•Updated Jul 7, 2023Jul 7, 2023

• ISAcreator

  Public
  ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).

  data-managementexperimental-metadataisa-tab-dataset+ 2javaisacreator

  Java

  •

  Other

  •26•40•48•2•Updated Mar 23, 2023Mar 23, 2023

• isa-specs

  Public
  ISA Model and Serialization Specifications

  HTML

  •6•5•1•4•Updated Feb 28, 2023Feb 28, 2023

• isa-contexts

  Public
  Python

  •0•0•1•0•Updated Feb 23, 2023Feb 23, 2023

• ISA-tools.github.io

  Public
  ISA tools website

  HTML

  •0•0•2•1•Updated Feb 15, 2023Feb 15, 2023

• isatools-notebooks

  Public
  Example Jupyter notebooks using the ISA-API

  Jupyter Notebook

  •

  BSD 3-Clause "New" or "Revised" License

  •2•5•4•5•Updated Feb 10, 2023Feb 10, 2023

• isa-configurations

  Public
  ISAconfiguration files which have been created by the ISAconfigurator. These can be used by ISAcreator, ISAvalidator, ISAconverter and the BII Data Management Tool

  9•5•5•0•Updated Jan 6, 2023Jan 6, 2023

• mzml2isa-galaxy

  Public
  mzml2isa for galaxy

  5•6•0•0•Updated Dec 7, 2022Dec 7, 2022

• BioSharingUtils

  Public
  A selection of tools to automatically update content in BioSharing.

  Java

  •0•1•0•1•Updated Jun 21, 2022Jun 21, 2022

• psql2graphql

  Public
  A PSQL to GRAPHQL python API using flask

  Python

  •

  GNU General Public License v3.0

  •1•0•0•1•Updated May 12, 2022May 12, 2022

• BioInvIndex

  Public
  The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).

  Java

  •13•16•12•0•Updated Feb 28, 2022Feb 28, 2022

• ISAconfigurator

  Public
  The ISAconfigurator allows for creation of XML files (configuration files) used to build spreadsheets in the ISAcreator and for validation in the creator and ISAvalidation code. Led by Eamonn Maguire, Philippe Rocca-Serra (Uni. of Oxford).

  Java

  •12•13•3•0•Updated Feb 28, 2022Feb 28, 2022

• stato-app

  Public
  The web application for the STATO ontology

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •2•0•0•0•Updated Feb 14, 2022Feb 14, 2022

• isa-create-test-notebooks

  Public
  A set of notebooks to create StudyDesigns

  Jupyter Notebook

  •1•0•0•0•Updated Aug 24, 2021Aug 24, 2021

• isaLD

  Public
  A netlify endpoint to inject ISA LD into ISA JSON

  JavaScript

  •0•0•0•0•Updated Jun 23, 2021Jun 23, 2021

• jUtils

  Public
  jUtils, a miscellanea of small and handy general purpose utilities for Java

  Java

  •6•6•0•5•Updated Jun 7, 2021Jun 7, 2021

• ISAcommons.github.io

  Public
  ISA commons website

  JavaScript

  •2•0•0•0•Updated Apr 25, 2021Apr 25, 2021

• isa-rest-service

  Public
  RESTful web service to use ISA API

  Python

  •

  Other

  •1•2•10•1•Updated Feb 16, 2021Feb 16, 2021

• isa-cookbook

  Public
  ISA python API documentation

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •1•1•0•0•Updated Jan 30, 2021Jan 30, 2021